Transcript: lnc-ZNF778-2:8

Basic information

LNCipedia transcript ID: lnc-ZNF778-2:8 
LNCipedia gene ID: lnc-ZNF778-2
Ensembl Gene ID: ENSG00000261253
Ensembl Transcript ID: ENST00000562995
Location (hg38): chr16:89321133-89325110
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1205 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562995.1; AC137932.6-002; OTTHUMT00000430487.2
Alternative gene names: ENSG00000261253.1; AC137932.6; OTTHUMG00000175559.2; ENSG00000261253.2; AC137932.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.9702 non-coding 
CPAT coding probability 53.30% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF778-2:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC009113.1-2:1
4.0 lnc-AC009113.1-2:1
4.1 lnc-AC009113.1-2:1
5.0 lnc-AC009113.1-2:1
5.1 lnc-SPG7-11:6
5.2 lnc-ZNF778-2:8