Transcript: lnc-ZNF778-2:9

Basic information

LNCipedia transcript ID: lnc-ZNF778-2:9 
LNCipedia gene ID: lnc-ZNF778-2
Location (hg38): chr16:89323224-89324533
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 563 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000565667.1; AC137932.6-001; OTTHUMT00000430488.1; NONHSAT144519
Alternative gene names: ENSG00000261253.1; AC137932.6; OTTHUMG00000175559.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.5331 non-coding 
CPAT coding probability 8.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF778-2:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC009113.1-2:2
4.0 lnc-AC009113.1-2:2
4.1 lnc-AC009113.1-2:2
5.0 lnc-AC009113.1-2:2
5.1 lnc-SPG7-11:7
5.2 lnc-ZNF778-2:9