Transcript: lnc-ZNF790-1:1

Basic information

LNCipedia transcript ID: lnc-ZNF790-1:1 
LNCipedia gene ID: lnc-ZNF790-1
Location (hg38): chr19:36850877-36851516
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 418 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000532488.1; CTD-2525J15.2-001; OTTHUMT00000388255.1; NONHSAT066052
Alternative gene names: ENSG00000254435.1; CTD-2525J15.2; OTTHUMG00000166186.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -915.6895 non-coding 
CPAT coding probability 11.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF790-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF790-1:1
4.0 lnc-ZNF790-1:1
4.1 lnc-ZNF790-1:1
5.0 lnc-ZNF790-1:1
5.1 lnc-ZFP30-21:1
5.2 lnc-ZNF790-1:1