Transcript: lnc-ZNF804B-2:3

Basic information

LNCipedia transcript ID: lnc-ZNF804B-2:3 
LNCipedia gene ID: lnc-ZNF804B-2
Location (hg38): chr7:89443972-89494262
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 673 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00013038; ENST00000448260; ENST00000448260.1; AC002383.2-001; OTTHUMT00000332975.1; NONHSAT121884
Alternative gene names: XLOC_006163; linc-STEAP1-3; ENSG00000227863; AC002383.2; ENSG00000227863.1; OTTHUMG00000153911.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.3812 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF804B-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF804B-1:3
3.1 lnc-ZNF804B-2:3
4.0 lnc-ZNF804B-2:3
4.1 lnc-ZNF804B-2:3
5.0 lnc-ZNF804B-2:3
5.1 lnc-LAMTOR4-132:4
5.2 lnc-ZNF804B-2:3