Transcript: lnc-ZNF843-2:1

Basic information

LNCipedia transcript ID: lnc-ZNF843-2:1 
LNCipedia gene ID: lnc-ZNF843-2
Ensembl Gene ID: ENSG00000260267
Ensembl Transcript ID: ENST00000564629
Location (hg38): chr16:31456711-31459736
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3026 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564629.1; RP11-452L6.5-001; OTTHUMT00000432844.1; NONHSAT141907
Alternative gene names: ENSG00000260267.1; RP11-452L6.5; OTTHUMG00000176617.1; AC026471.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.5516 non-coding 
CPAT coding probability 98.98% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZNF843-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF843-2:1
4.0 lnc-ZNF843-2:1
4.1 lnc-ZNF843-2:1
5.0 lnc-ZNF843-2:1
5.1 lnc-SULT1A2-115:3
5.2 lnc-ZNF843-2:1