Transcript: lnc-ZNF843-2:5

Basic information

LNCipedia transcript ID: lnc-ZNF843-2:5 
LNCipedia gene ID: lnc-ZNF843-2
Ensembl Gene ID: ENSG00000261474
Ensembl Transcript ID: ENST00000569291
Location (hg38): chr16:31449535-31453493
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569291.1; RP11-452L6.1-001; OTTHUMT00000431527.1; NONHSAT141906
Alternative gene names: ENSG00000261474.1; RP11-452L6.1; OTTHUMG00000176118.1; AC026471.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.0898 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF843-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF843-1:1
4.0 lnc-ZNF843-2:5
4.1 lnc-ZNF843-2:5
5.0 lnc-ZNF843-2:5
5.1 lnc-SULT1A2-115:7
5.2 lnc-ZNF843-2:5