Transcript: lnc-ZNF99-2:2

Basic information

LNCipedia transcript ID: lnc-ZNF99-2:2 
LNCipedia gene ID: lnc-ZNF99-2
Ensembl Gene ID: ENSG00000260599
Ensembl Transcript ID: ENST00000562262
RefSeq ID: NR_110427
Location (hg38): chr19:22520995-22527949
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3355 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000562262.1; CTC-457E21.1-001; OTTHUMT00000430906.1; NONHSAT063795; NR_110427; NR_110427.1
Alternative gene names: ENSG00000260599.1; CTC-457E21.1; OTTHUMG00000175727.1; AC011467.1; LOC101929124


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.289 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF99-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF98-2:1
4.0 lnc-ZNF98-2:1
4.1 lnc-ZNF98-2:1
5.0 lnc-ZNF98-2:1
5.1 lnc-PALM3-221:1
5.2 lnc-ZNF99-2:2