Transcript: lnc-ZNFX1-3:1

Basic information

LNCipedia transcript ID: lnc-ZNFX1-3:1 
LNCipedia gene ID: lnc-ZNFX1-3
Location (hg38): chr20:49363886-49367759
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3874 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000562732.1; RP4-791K14.2-001; OTTHUMT00000430528.1
Alternative gene names: ENSG00000260124.1; RP4-791K14.2; OTTHUMG00000175572.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.7847 non-coding 
CPAT coding probability 7.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNFX1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNB1-1:1
4.0 lnc-KCNB1-1:1
4.1 lnc-KCNB1-1:1
5.0 lnc-KCNB1-1:1
5.1 lnc-SPATA2-18:1
5.2 lnc-ZNFX1-3:1