Transcript: lnc-ZPBP2-3:1

Basic information

LNCipedia transcript ID: lnc-ZPBP2-3:1 
LNCipedia gene ID: lnc-ZPBP2-3
Location (hg38): chr17:39892154-39893566
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1413 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT053490; FPKM1_group_12713_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
DGWGGSSTFKR 97.3684210526316% antisense-3
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.2544 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZPBP2-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZPBP2-3:1
4.0 lnc-ZPBP2-3:1
4.1 lnc-ZPBP2-3:1
5.0 lnc-ZPBP2-3:1
5.1 lnc-THRA-9:1
5.2 lnc-ZPBP2-3:1