Transcript: lnc-ZSCAN10-1:2

Basic information

LNCipedia transcript ID: lnc-ZSCAN10-1:2 
LNCipedia gene ID: lnc-ZSCAN10-1
Ensembl Gene ID: ENSG00000262370
Ensembl Transcript ID: ENST00000574387
Location (hg38): chr16:3078320-3087087
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 677 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000574387.1; RP11-473M20.9-003; OTTHUMT00000437123.1; NONHSAT147956
Alternative gene names: ENSG00000262370.1; RP11-473M20.9; OTTHUMG00000177477.1; ENSG00000262370.5; AC108134.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 48.6999 non-coding 
CPAT coding probability 18.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ZSCAN10-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSCAN10-1:2
4.0 lnc-ZSCAN10-1:2
4.1 lnc-ZSCAN10-1:2
5.0 lnc-ZSCAN10-1:2
5.1 lnc-PKMYT1-15:7
5.2 lnc-ZSCAN10-1:2