Transcript: lnc-ZSCAN10-3:23

Basic information

LNCipedia transcript ID: lnc-ZSCAN10-3:23 
LNCipedia gene ID: lnc-ZSCAN10-3
RefSeq ID: NR_110900
Location (hg38): chr16:3125529-3134882
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1125 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110900; NR_110900.1
Alternative gene names: ZNF213-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 31.2915 non-coding 
CPAT coding probability 32.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN10-3:23 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSCAN10-3:23
4.0 lnc-ZSCAN10-3:23
4.1 lnc-ZSCAN10-3:23
5.0 lnc-ZSCAN10-3:23
5.1 lnc-PKMYT1-20:3
5.2 lnc-ZSCAN10-3:23