Transcript: lnc-ZSCAN10-3:36

Basic information

LNCipedia transcript ID: lnc-ZSCAN10-3:36 
LNCipedia gene ID: lnc-ZSCAN10-3
Location (hg38): chr16:3128672-3134860
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1570 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000263072.1|ENST00000571963.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.583 non-coding 
CPAT coding probability 9.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN10-3:36 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZSCAN10-3:36
5.0 lnc-ZSCAN10-3:36
5.1 lnc-PKMYT1-20:13
5.2 lnc-ZSCAN10-3:36