Transcript: lnc-ZSCAN10-3:46

Basic information

LNCipedia transcript ID: lnc-ZSCAN10-3:46 
LNCipedia gene ID: lnc-ZSCAN10-3
Location (hg38): chr16:3106839-3112508
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 5670 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000263214.1|ENCT00000162966.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.7467 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN10-3:46 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ZSCAN10-3:46
5.0 lnc-ZSCAN10-3:46
5.1 lnc-PKMYT1-20:45
5.2 lnc-ZSCAN10-3:46