Transcript: lnc-ZSCAN10-3:9

Basic information

LNCipedia transcript ID: lnc-ZSCAN10-3:9 
HGNC Gene Symbol: lnc-ZSCAN10-3    
HGNC Full Gene Name: ZNF213 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000263072
Ensembl Transcript ID: ENST00000573414
Location (hg38): chr16:3125600-3129554
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 461 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573414.1; RP11-473M20.14-009; OTTHUMT00000437325.1; NONHSAT147966
Alternative gene names: ENSG00000263072.1; RP11-473M20.14; OTTHUMG00000177518.1; ENSG00000263072.6; ZNF213-AS1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.6756 non-coding 
CPAT coding probability 5.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSCAN10-3:9 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSCAN10-3:9
4.0 lnc-ZSCAN10-3:9
4.1 lnc-ZSCAN10-3:9
5.0 lnc-ZSCAN10-3:9
5.1 lnc-PKMYT1-20:33
5.2 lnc-ZSCAN10-3:9