Transcript: lnc-ZSWIM2-2:1

Basic information

LNCipedia transcript ID: lnc-ZSWIM2-2:1 
LNCipedia gene ID: lnc-ZSWIM2-2
Location (hg38): chr2:186354572-186356773
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2202 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000564407.1; RP11-410E4.1-001; OTTHUMT00000431706.1
Alternative gene names: ENSG00000259915.1; RP11-410E4.1; OTTHUMG00000176270.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.8556 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZSWIM2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZSWIM2-2:1
4.0 lnc-ZSWIM2-2:1
4.1 lnc-ZSWIM2-2:1
5.0 lnc-ZSWIM2-2:1
5.1 lnc-CALCRL-5:1
5.2 lnc-ZSWIM2-2:1