Gene: FENDRR
Basic information
LNCipedia gene ID: FENDRR
Location (hg38): chr16:86473638-86509099
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 30
Transcripts
| Transcript ID | Location (hg38) | Length |
|---|---|---|
| FENDRR:1 | chr16:86487737-86509099 | 2843 bp |
| FENDRR:10 | chr16:86487710-86498566 | 2568 bp |
| FENDRR:11 | chr16:86474445-86498566 | 3300 bp |
| FENDRR:12 | chr16:86487713-86498510 | 3379 bp |
| FENDRR:13 | chr16:86477124-86490881 | 355 bp |
| FENDRR:14 | chr16:86487718-86490879 | 2823 bp |
| FENDRR:15 | chr16:86487716-86490879 | 2825 bp |
| FENDRR:16 | chr16:86487706-86490879 | 2835 bp |
| FENDRR:17 | chr16:86474539-86477993 | 2138 bp |
| FENDRR:18 | chr16:86490183-86508886 | 563 bp |
| FENDRR:19 | chr16:86490268-86508886 | 969 bp |
| FENDRR:2 | chr16:86490268-86508877 | 960 bp |
| FENDRR:20 | chr16:86474529-86508886 | 3121 bp |
| FENDRR:21 | chr16:86474623-86508886 | 3211 bp |
| FENDRR:22 | chr16:86474623-86508886 | 3606 bp |
| FENDRR:23 | chr16:86478011-86508886 | 731 bp |
| FENDRR:24 | chr16:86487737-86508886 | 2630 bp |
| FENDRR:25 | chr16:86473638-86498552 | 4093 bp |
| FENDRR:26 | chr16:86474623-86498552 | 3164 bp |
| FENDRR:27 | chr16:86478030-86498552 | 609 bp |
| FENDRR:28 | chr16:86478030-86498552 | 863 bp |
| FENDRR:29 | chr16:86490226-86498552 | 569 bp |
| FENDRR:3 | chr16:86490183-86508876 | 553 bp |
| FENDRR:30 | chr16:86487663-86508860 | 2678 bp |
| FENDRR:4 | chr16:86474529-86508860 | 3095 bp |
| FENDRR:5 | chr16:86474525-86508860 | 3099 bp |
| FENDRR:6 | chr16:86487665-86508860 | 2676 bp |
| FENDRR:7 | chr16:86487737-86508835 | 2579 bp |
| FENDRR:8 | chr16:86476713-86508713 | 546 bp |
| FENDRR:9 | chr16:86490226-86498585 | 602 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| FENDRR | no | no | no | no |
Available literature
- Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
- Li (2015), Genome-Wide Analysis of Long Noncoding RNA Expression Profiles in Human Xuanwei Lung Cancer., Clin. Lab.
- Wei (2015), Transcriptome profiling of esophageal squamous cell carcinoma reveals a long noncoding RNA acting as a tumor suppressor., Oncotarget
- Yue (2015), Long non-coding RNA Fer-1-like protein 4 suppresses oncogenesis and exhibits prognostic value by associating with miR-106a-5p in colon cancer., Cancer Sci.
- Zhu (2015), Long noncoding RNA expression profiles of the doxorubicin-resistant human osteosarcoma cell line MG63/DXR and its parental cell line MG63 as ascertained by microarray analysis., Int J Clin Exp Pathol
- Marian (2014), Recent developments in cardiovascular genetics and genomics., Circ. Res.
- Xu (2014), Decreased expression of the long non-coding RNA FENDRR is associated with poor prognosis in gastric cancer and FENDRR regulates gastric cancer cell metastasis by affecting fibronectin1 expression., J Hematol Oncol
- Grote (2013), The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse., Dev. Cell
- Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
- Szafranski (2013), Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorder., Genome Res.
- Khalil (2009), Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression., Proc. Natl. Acad. Sci. U.S.A.