Gene: SOX2-OT
Basic information
LNCipedia gene ID: SOX2-OT
Location (hg38): chr3:180989762-181836880
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA_gene
Transcripts: 127
Transcripts
| Transcript ID | Location (hg38) | Length |
|---|---|---|
| SOX2-OT:10 | chr3:181056685-181699784 | 609 bp |
| SOX2-OT:100 | chr3:181698644-181740765 | 1500 bp |
| SOX2-OT:101 | chr3:181698810-181740863 | 2011 bp |
| SOX2-OT:102 | chr3:181699223-181740747 | 1948 bp |
| SOX2-OT:103 | chr3:181699598-181739721 | 607 bp |
| SOX2-OT:104 | chr3:181699598-181783836 | 626 bp |
| SOX2-OT:105 | chr3:181699598-181739830 | 753 bp |
| SOX2-OT:106 | chr3:181699598-181836752 | 690 bp |
| SOX2-OT:107 | chr3:181699598-181779013 | 873 bp |
| SOX2-OT:108 | chr3:181699598-181709850 | 469 bp |
| SOX2-OT:109 | chr3:181699598-181791003 | 745 bp |
| SOX2-OT:11 | chr3:181174890-181700044 | 1342 bp |
| SOX2-OT:110 | chr3:181699598-181814303 | 512 bp |
| SOX2-OT:111 | chr3:181699598-181836638 | 772 bp |
| SOX2-OT:112 | chr3:181699598-181700100 | 383 bp |
| SOX2-OT:113 | chr3:181699598-181791063 | 677 bp |
| SOX2-OT:114 | chr3:181699598-181791037 | 759 bp |
| SOX2-OT:115 | chr3:181699598-181741195 | 836 bp |
| SOX2-OT:116 | chr3:181699598-181790932 | 789 bp |
| SOX2-OT:117 | chr3:181699598-181778604 | 619 bp |
| SOX2-OT:118 | chr3:181699598-181739670 | 664 bp |
| SOX2-OT:119 | chr3:181699598-181739823 | 798 bp |
| SOX2-OT:12 | chr3:181175025-181563855 | 560 bp |
| SOX2-OT:120 | chr3:181699598-181836879 | 850 bp |
| SOX2-OT:121 | chr3:181699598-181790994 | 743 bp |
| SOX2-OT:122 | chr3:181699606-181740802 | 1711 bp |
| SOX2-OT:123 | chr3:181699837-181740823 | 1675 bp |
| SOX2-OT:124 | chr3:181711102-181740872 | 1676 bp |
| SOX2-OT:125 | chr3:181723193-181740840 | 1703 bp |
| SOX2-OT:126 | chr3:181725976-181740737 | 1279 bp |
| SOX2-OT:127 | chr3:181727025-181742417 | 2920 bp |
| SOX2-OT:128 | chr3:181727718-181740681 | 1444 bp |
| SOX2-OT:13 | chr3:181175144-181739657 | 561 bp |
| SOX2-OT:14 | chr3:181175144-181742225 | 3129 bp |
| SOX2-OT:15 | chr3:181359485-181699637 | 649 bp |
| SOX2-OT:16 | chr3:181550754-181739687 | 864 bp |
| SOX2-OT:17 | chr3:181550755-181631004 | 716 bp |
| SOX2-OT:18 | chr3:181550773-181699883 | 847 bp |
| SOX2-OT:19 | chr3:181550779-181699796 | 675 bp |
| SOX2-OT:2 | chr3:180989770-181057244 | 751 bp |
| SOX2-OT:20 | chr3:181550794-181671612 | 348 bp |
| SOX2-OT:21 | chr3:181563456-181630890 | 578 bp |
| SOX2-OT:22 | chr3:181563456-181671741 | 1252 bp |
| SOX2-OT:23 | chr3:181563710-181671741 | 454 bp |
| SOX2-OT:24 | chr3:181563721-181742473 | 3576 bp |
| SOX2-OT:25 | chr3:181601158-181699883 | 737 bp |
| SOX2-OT:26 | chr3:181610334-181739693 | 606 bp |
| SOX2-OT:27 | chr3:181610334-181742225 | 3532 bp |
| SOX2-OT:28 | chr3:181610334-181742225 | 3424 bp |
| SOX2-OT:29 | chr3:181610334-181742225 | 3138 bp |
| SOX2-OT:3 | chr3:180989770-181699883 | 836 bp |
| SOX2-OT:30 | chr3:181610363-181741230 | 2508 bp |
| SOX2-OT:31 | chr3:181610524-181739873 | 882 bp |
| SOX2-OT:32 | chr3:181610529-181790946 | 560 bp |
| SOX2-OT:33 | chr3:181610541-181699880 | 561 bp |
| SOX2-OT:34 | chr3:181610609-181710295 | 979 bp |
| SOX2-OT:35 | chr3:181699493-181740079 | 902 bp |
| SOX2-OT:36 | chr3:181699496-181739998 | 926 bp |
| SOX2-OT:37 | chr3:181699594-181700100 | 387 bp |
| SOX2-OT:38 | chr3:181699595-181790932 | 792 bp |
| SOX2-OT:39 | chr3:181699595-181739721 | 610 bp |
| SOX2-OT:4 | chr3:180989781-181175819 | 566 bp |
| SOX2-OT:40 | chr3:181699595-181783836 | 629 bp |
| SOX2-OT:41 | chr3:181699595-181709850 | 472 bp |
| SOX2-OT:42 | chr3:181699595-181814303 | 515 bp |
| SOX2-OT:43 | chr3:181699595-181739830 | 756 bp |
| SOX2-OT:44 | chr3:181699595-181739670 | 667 bp |
| SOX2-OT:45 | chr3:181699595-181741195 | 839 bp |
| SOX2-OT:46 | chr3:181699595-181836879 | 853 bp |
| SOX2-OT:47 | chr3:181699595-181791003 | 748 bp |
| SOX2-OT:48 | chr3:181699595-181836638 | 775 bp |
| SOX2-OT:49 | chr3:181699595-181790994 | 746 bp |
| SOX2-OT:5 | chr3:180989783-181699883 | 1012 bp |
| SOX2-OT:50 | chr3:181699595-181836752 | 693 bp |
| SOX2-OT:51 | chr3:181699595-181779013 | 876 bp |
| SOX2-OT:52 | chr3:181699595-181778604 | 622 bp |
| SOX2-OT:53 | chr3:181699595-181791037 | 762 bp |
| SOX2-OT:54 | chr3:181699595-181791063 | 680 bp |
| SOX2-OT:55 | chr3:181699595-181739823 | 801 bp |
| SOX2-OT:56 | chr3:181699598-181778661 | 581 bp |
| SOX2-OT:57 | chr3:181699599-181836805 | 762 bp |
| SOX2-OT:58 | chr3:181699599-181836831 | 905 bp |
| SOX2-OT:59 | chr3:181699619-181709602 | 954 bp |
| SOX2-OT:6 | chr3:181003774-181175819 | 507 bp |
| SOX2-OT:60 | chr3:181699619-181702390 | 495 bp |
| SOX2-OT:61 | chr3:181699619-181739761 | 660 bp |
| SOX2-OT:62 | chr3:181699619-181736479 | 572 bp |
| SOX2-OT:63 | chr3:181699619-181702420 | 575 bp |
| SOX2-OT:64 | chr3:181699621-181707511 | 445 bp |
| SOX2-OT:65 | chr3:181699837-181739766 | 618 bp |
| SOX2-OT:66 | chr3:181699840-181836880 | 468 bp |
| SOX2-OT:67 | chr3:181701427-181740237 | 692 bp |
| SOX2-OT:68 | chr3:181825628-181836879 | 540 bp |
| SOX2-OT:69 | chr3:180989762-181117494 | 796 bp |
| SOX2-OT:7 | chr3:181056680-181740025 | 1239 bp |
| SOX2-OT:70 | chr3:180989773-181058745 | 1622 bp |
| SOX2-OT:71 | chr3:180989773-181058326 | 1242 bp |
| SOX2-OT:72 | chr3:180989773-181176513 | 1199 bp |
| SOX2-OT:73 | chr3:180989773-181331523 | 1238 bp |
| SOX2-OT:74 | chr3:180989775-181023250 | 3274 bp |
| SOX2-OT:75 | chr3:180989779-181740772 | 2151 bp |
| SOX2-OT:76 | chr3:180989779-181740886 | 2291 bp |
| SOX2-OT:77 | chr3:180989787-181031971 | 1468 bp |
| SOX2-OT:78 | chr3:180989790-181566165 | 2779 bp |
| SOX2-OT:79 | chr3:180989790-181413069 | 392 bp |
| SOX2-OT:8 | chr3:181056680-181742225 | 3547 bp |
| SOX2-OT:80 | chr3:180989790-181130996 | 1390 bp |
| SOX2-OT:81 | chr3:180989790-181331502 | 1080 bp |
| SOX2-OT:82 | chr3:180989793-181740811 | 2207 bp |
| SOX2-OT:83 | chr3:180989816-181740820 | 1766 bp |
| SOX2-OT:84 | chr3:181056680-181742228 | 3442 bp |
| SOX2-OT:85 | chr3:181056680-181742228 | 3550 bp |
| SOX2-OT:86 | chr3:181056683-181564572 | 1068 bp |
| SOX2-OT:87 | chr3:181175025-181740814 | 2234 bp |
| SOX2-OT:88 | chr3:181175144-181742228 | 3132 bp |
| SOX2-OT:89 | chr3:181175169-181632180 | 1884 bp |
| SOX2-OT:9 | chr3:181056680-181742225 | 3439 bp |
| SOX2-OT:90 | chr3:181461582-181742884 | 4109 bp |
| SOX2-OT:91 | chr3:181461584-181611647 | 1115 bp |
| SOX2-OT:92 | chr3:181610334-181742228 | 3141 bp |
| SOX2-OT:93 | chr3:181610334-181742228 | 3427 bp |
| SOX2-OT:94 | chr3:181610334-181742228 | 3535 bp |
| SOX2-OT:95 | chr3:181610469-181614654 | 1967 bp |
| SOX2-OT:96 | chr3:181610523-181740686 | 1700 bp |
| SOX2-OT:97 | chr3:181610524-181673402 | 2276 bp |
| SOX2-OT:98 | chr3:181610529-181621883 | 989 bp |
| SOX2-OT:99 | chr3:181610770-181740686 | 1672 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| SOX2-OT | no | no | no | no |
Available literature
- Iranpour (2016), Expression analysis of four long noncoding RNAs in breast cancer., Tumour Biol.
- Shi (2015), Up-regulation of long non-coding RNA Sox2ot promotes hepatocellular carcinoma cell metastasis and correlates with poor prognosis., Int J Clin Exp Pathol
- Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
- Wang (2015), Genome-scale long noncoding RNA expression pattern in squamous cell lung cancer., Sci Rep
- Askarian-Amiri (2014), Emerging role of long non-coding RNA SOX2OT in SOX2 regulation in breast cancer., PLoS ONE
- Chaudhry (2014), Small nucleolar RNA host genes and long non-coding RNA responses in directly irradiated and bystander cells., Cancer Biother. Radiopharm.
- Hou (2014), A long noncoding RNA Sox2ot regulates lung cancer cell proliferation and is a prognostic indicator of poor survival., Int. J. Biochem. Cell Biol.
- Shahryari (2014), Two novel splice variants of SOX2OT, SOX2OT-S1, and SOX2OT-S2 are coupregulated with SOX2 and OCT4 in esophageal squamous cell carcinoma., Stem Cells
- Zhao (2014), Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma., Onco Targets Ther
- Chaudhry (2013), Expression pattern of small nucleolar RNA host genes and long non-coding RNA in X-rays-treated lymphoblastoid cells., Int J Mol Sci
- Qureshi (2012), Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease., Nat. Rev. Neurosci.
- Amaral (2009), Complex architecture and regulated expression of the Sox2ot locus during vertebrate development., RNA
- Fantes (2003), Mutations in SOX2 cause anophthalmia., Nat. Genet.