Gene: lnc-FAM84B-15
Basic information
LNCipedia gene ID: lnc-FAM84B-15
Location (hg38): chr8:127072694-127482139
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA_gene
Transcripts: 108
Transcripts
| Transcript ID | Location (hg38) | Length |
|---|---|---|
| lnc-FAM84B-15:100 | chr8:127078895-127185243 | 656 bp |
| lnc-FAM84B-15:101 | chr8:127168422-127179838 | 1069 bp |
| lnc-FAM84B-15:102 | chr8:127168352-127174844 | 1421 bp |
| lnc-FAM84B-15:103 | chr8:127116662-127144417 | 1172 bp |
| lnc-FAM84B-15:106 | chr8:127078439-127082282 | 857 bp |
| lnc-FAM84B-15:109 | chr8:127443350-127482139 | 1412 bp |
| lnc-FAM84B-15:110 | chr8:127289817-127482139 | 1420 bp |
| lnc-FAM84B-15:111 | chr8:127289676-127482139 | 1561 bp |
| lnc-FAM84B-15:112 | chr8:127289818-127421374 | 789 bp |
| lnc-FAM84B-15:113 | chr8:127289817-127421374 | 930 bp |
| lnc-FAM84B-15:114 | chr8:127077559-127294792 | 33734 bp |
| lnc-FAM84B-15:115 | chr8:127287510-127294728 | 2625 bp |
| lnc-FAM84B-15:116 | chr8:127287510-127294728 | 4161 bp |
| lnc-FAM84B-15:117 | chr8:127287510-127294728 | 7219 bp |
| lnc-FAM84B-15:118 | chr8:127277048-127288270 | 2131 bp |
| lnc-FAM84B-15:119 | chr8:127221791-127229305 | 3933 bp |
| lnc-FAM84B-15:120 | chr8:127168907-127229305 | 2705 bp |
| lnc-FAM84B-15:121 | chr8:127228567-127229132 | 566 bp |
| lnc-FAM84B-15:122 | chr8:127207382-127219268 | 2795 bp |
| lnc-FAM84B-15:123 | chr8:127207866-127219088 | 2131 bp |
| lnc-FAM84B-15:124 | chr8:127207866-127219086 | 2129 bp |
| lnc-FAM84B-15:125 | chr8:127209334-127213374 | 1238 bp |
| lnc-FAM84B-15:126 | chr8:127185635-127203222 | 367 bp |
| lnc-FAM84B-15:127 | chr8:127187786-127197627 | 323 bp |
| lnc-FAM84B-15:128 | chr8:127185146-127188095 | 776 bp |
| lnc-FAM84B-15:129 | chr8:127141346-127185735 | 1349 bp |
| lnc-FAM84B-15:130 | chr8:127116411-127144192 | 1198 bp |
| lnc-FAM84B-15:131 | chr8:127086263-127087510 | 1248 bp |
| lnc-FAM84B-15:132 | chr8:127078900-127082268 | 382 bp |
| lnc-FAM84B-15:133 | chr8:127072694-127082221 | 575 bp |
| lnc-FAM84B-15:14 | chr8:127222322-127227541 | 1638 bp |
| lnc-FAM84B-15:15 | chr8:127223247-127227541 | 571 bp |
| lnc-FAM84B-15:16 | chr8:127222314-127224476 | 1430 bp |
| lnc-FAM84B-15:17 | chr8:127168359-127224476 | 966 bp |
| lnc-FAM84B-15:18 | chr8:127185529-127224436 | 816 bp |
| lnc-FAM84B-15:19 | chr8:127168359-127223666 | 1173 bp |
| lnc-FAM84B-15:20 | chr8:127223008-127223666 | 356 bp |
| lnc-FAM84B-15:21 | chr8:127184750-127219395 | 1868 bp |
| lnc-FAM84B-15:23 | chr8:127168359-127219260 | 1443 bp |
| lnc-FAM84B-15:24 | chr8:127204412-127219238 | 5735 bp |
| lnc-FAM84B-15:25 | chr8:127161579-127219237 | 1154 bp |
| lnc-FAM84B-15:26 | chr8:127168842-127219233 | 875 bp |
| lnc-FAM84B-15:27 | chr8:127168422-127219220 | 1107 bp |
| lnc-FAM84B-15:28 | chr8:127179481-127219146 | 866 bp |
| lnc-FAM84B-15:29 | chr8:127185047-127219127 | 1382 bp |
| lnc-FAM84B-15:30 | chr8:127184756-127219123 | 1684 bp |
| lnc-FAM84B-15:31 | chr8:127161834-127219118 | 959 bp |
| lnc-FAM84B-15:34 | chr8:127168359-127218995 | 925 bp |
| lnc-FAM84B-15:35 | chr8:127184739-127218991 | 1385 bp |
| lnc-FAM84B-15:36 | chr8:127168708-127218969 | 1047 bp |
| lnc-FAM84B-15:37 | chr8:127179177-127218968 | 1050 bp |
| lnc-FAM84B-15:38 | chr8:127168676-127218968 | 2055 bp |
| lnc-FAM84B-15:39 | chr8:127168708-127218968 | 1356 bp |
| lnc-FAM84B-15:40 | chr8:127184755-127218968 | 1404 bp |
| lnc-FAM84B-15:41 | chr8:127152871-127218968 | 1360 bp |
| lnc-FAM84B-15:42 | chr8:127168708-127218968 | 915 bp |
| lnc-FAM84B-15:43 | chr8:127185047-127218968 | 1313 bp |
| lnc-FAM84B-15:44 | chr8:127185047-127218967 | 1184 bp |
| lnc-FAM84B-15:45 | chr8:127116660-127218967 | 1184 bp |
| lnc-FAM84B-15:46 | chr8:127184755-127218967 | 1493 bp |
| lnc-FAM84B-15:47 | chr8:127168422-127218936 | 1146 bp |
| lnc-FAM84B-15:48 | chr8:127168674-127218935 | 974 bp |
| lnc-FAM84B-15:49 | chr8:127168422-127218931 | 2219 bp |
| lnc-FAM84B-15:50 | chr8:127168422-127218931 | 993 bp |
| lnc-FAM84B-15:51 | chr8:127185607-127218925 | 1558 bp |
| lnc-FAM84B-15:52 | chr8:127168422-127218909 | 1140 bp |
| lnc-FAM84B-15:53 | chr8:127185529-127218888 | 1287 bp |
| lnc-FAM84B-15:54 | chr8:127179463-127218874 | 871 bp |
| lnc-FAM84B-15:55 | chr8:127168708-127218870 | 870 bp |
| lnc-FAM84B-15:56 | chr8:127185529-127218852 | 970 bp |
| lnc-FAM84B-15:57 | chr8:127168699-127218842 | 2001 bp |
| lnc-FAM84B-15:59 | chr8:127180362-127209635 | 1373 bp |
| lnc-FAM84B-15:60 | chr8:127187785-127208668 | 679 bp |
| lnc-FAM84B-15:61 | chr8:127168818-127208327 | 886 bp |
| lnc-FAM84B-15:62 | chr8:127152877-127208202 | 1156 bp |
| lnc-FAM84B-15:63 | chr8:127168831-127206838 | 1244 bp |
| lnc-FAM84B-15:64 | chr8:127185529-127206123 | 1522 bp |
| lnc-FAM84B-15:65 | chr8:127185017-127205716 | 1554 bp |
| lnc-FAM84B-15:66 | chr8:127184755-127205596 | 1606 bp |
| lnc-FAM84B-15:67 | chr8:127185529-127205569 | 1157 bp |
| lnc-FAM84B-15:68 | chr8:127168406-127205522 | 1292 bp |
| lnc-FAM84B-15:69 | chr8:127184750-127205511 | 1415 bp |
| lnc-FAM84B-15:70 | chr8:127168422-127205467 | 1206 bp |
| lnc-FAM84B-15:71 | chr8:127161584-127205432 | 1411 bp |
| lnc-FAM84B-15:72 | chr8:127168422-127205395 | 1285 bp |
| lnc-FAM84B-15:73 | chr8:127152871-127203227 | 1546 bp |
| lnc-FAM84B-15:75 | chr8:127147275-127203220 | 2204 bp |
| lnc-FAM84B-15:76 | chr8:127168654-127203220 | 958 bp |
| lnc-FAM84B-15:77 | chr8:127168360-127203198 | 1251 bp |
| lnc-FAM84B-15:78 | chr8:127168193-127203175 | 770 bp |
| lnc-FAM84B-15:79 | chr8:127152877-127203166 | 818 bp |
| lnc-FAM84B-15:80 | chr8:127168138-127202237 | 1351 bp |
| lnc-FAM84B-15:81 | chr8:127140276-127202132 | 1530 bp |
| lnc-FAM84B-15:82 | chr8:127186807-127202080 | 1117 bp |
| lnc-FAM84B-15:83 | chr8:127185047-127201123 | 1091 bp |
| lnc-FAM84B-15:84 | chr8:127186004-127198147 | 1074 bp |
| lnc-FAM84B-15:86 | chr8:127187785-127197627 | 324 bp |
| lnc-FAM84B-15:87 | chr8:127168359-127197556 | 1061 bp |
| lnc-FAM84B-15:88 | chr8:127185047-127192315 | 1545 bp |
| lnc-FAM84B-15:89 | chr8:127185590-127191258 | 842 bp |
| lnc-FAM84B-15:90 | chr8:127184761-127190842 | 2114 bp |
| lnc-FAM84B-15:91 | chr8:127184761-127189103 | 2329 bp |
| lnc-FAM84B-15:92 | chr8:127185047-127189052 | 1832 bp |
| lnc-FAM84B-15:93 | chr8:127152871-127188843 | 2091 bp |
| lnc-FAM84B-15:94 | chr8:127168359-127188394 | 1384 bp |
| lnc-FAM84B-15:95 | chr8:127185480-127188210 | 561 bp |
| lnc-FAM84B-15:96 | chr8:127168654-127188210 | 1065 bp |
| lnc-FAM84B-15:97 | chr8:127161824-127188120 | 832 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| lnc-FAM84B-15 | no | no | no | no |
Available literature
- Li (2016), Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells., Nucleic Acids Res.
- Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
- Al-Tassan (2015), A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer., Sci Rep
- Cabanski (2015), Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function., RNA Biol
- Deng (2015), Long noncoding RNA CCAT1 promotes hepatocellular carcinoma progression by functioning as let-7 sponge., J. Exp. Clin. Cancer Res.
- Hu (2015), Downregulation of NUF2 inhibits tumor growth and induces apoptosis by regulating lncRNA AF339813., Int J Clin Exp Pathol
- Kim (2015), MYC-repressed long noncoding RNAs antagonize MYC-induced cell proliferation and cell cycle progression., Oncotarget
- Ma (2015), Genetic variant in 8q24 is associated with prognosis for gastric cancer in a Chinese population., J. Gastroenterol. Hepatol.
- Ma (2015), Long non-coding RNA CCAT1 promotes gallbladder cancer development via negative modulation of miRNA-218-5p., Cell Death Dis
- Mizrahi (2015), Colon Cancer Associated Transcript-1 (CCAT1) Expression in Adenocarcinoma of the Stomach., J Cancer
- Ruan (2015), Long non-coding RNA expression profile in atrial fibrillation., Int J Clin Exp Pathol
- Ye (2015), Expression of lncRNA-CCAT1, E-cadherin and N-cadherin in colorectal cancer and its clinical significance., Int J Clin Exp Med
- Zhai (2015), Long noncoding RNA MALAT1 as a putative biomarker of lymph node metastasis: a meta-analysis., Int J Clin Exp Med
- Zhang (2015), Overexpression of long non-coding RNA CCAT1 is a novel biomarker of poor prognosis in patients with breast cancer., Int J Clin Exp Pathol
- Zhou (2015), Identification of the long non-coding RNA H19 in plasma as a novel biomarker for diagnosis of gastric cancer., Sci Rep
- Zhu (2015), CCAT1 promotes hepatocellular carcinoma cell proliferation and invasion., Int J Clin Exp Pathol
- Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.
- He (2014), C-Myc-activated long noncoding RNA CCAT1 promotes colon cancer cell proliferation and invasion., Tumour Biol.
- Kam (2014), Detection of a long non-coding RNA (CCAT1) in living cells and human adenocarcinoma of colon tissues using FIT-PNA molecular beacons., Cancer Lett.
- Kim (2014), Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5., Proc. Natl. Acad. Sci. U.S.A.
- Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
- Xiang (2014), Human colorectal cancer-specific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus., Cell Res.
- Younger (2014), 'Lnc'-ing enhancers to MYC regulation., Cell Res.
- Alaiyan (2013), Differential expression of colon cancer associated transcript1 (CCAT1) along the colonic adenoma-carcinoma sequence., BMC Cancer
- Liu (2013), Identification of differentially expressed long non-coding RNAs in human ovarian cancer cells with different metastatic potentials., Cancer Biol Med
- Yang (2013), Long noncoding RNA CCAT1, which could be activated by c-Myc, promotes the progression of gastric carcinoma., J. Cancer Res. Clin. Oncol.
- Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis