Gene: lnc-SNRPN-8
Basic information
LNCipedia gene ID: lnc-SNRPN-8
Location (hg38): chr15:24978583-25247288
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA_gene
Transcripts: 82
Transcripts
| Transcript ID | Location (hg38) | Length |
|---|---|---|
| lnc-SNRPN-8:100 | chr15:25000305-25020825 | 470 bp |
| lnc-SNRPN-8:101 | chr15:25000314-25002404 | 1108 bp |
| lnc-SNRPN-8:102 | chr15:25002771-25019149 | 241 bp |
| lnc-SNRPN-8:103 | chr15:25002826-25021084 | 722 bp |
| lnc-SNRPN-8:104 | chr15:25014323-25036558 | 17889 bp |
| lnc-SNRPN-8:105 | chr15:25015940-25036491 | 14547 bp |
| lnc-SNRPN-8:106 | chr15:25019035-25053916 | 552 bp |
| lnc-SNRPN-8:107 | chr15:25019825-25036491 | 14289 bp |
| lnc-SNRPN-8:108 | chr15:25031873-25036490 | 4618 bp |
| lnc-SNRPN-8:109 | chr15:25033364-25036490 | 3127 bp |
| lnc-SNRPN-8:110 | chr15:25040405-25040843 | 354 bp |
| lnc-SNRPN-8:111 | chr15:25041918-25042428 | 511 bp |
| lnc-SNRPN-8:112 | chr15:25050632-25122476 | 7844 bp |
| lnc-SNRPN-8:113 | chr15:25050632-25122476 | 7844 bp |
| lnc-SNRPN-8:114 | chr15:25051089-25056565 | 626 bp |
| lnc-SNRPN-8:115 | chr15:25053867-25115657 | 4686 bp |
| lnc-SNRPN-8:116 | chr15:25054713-25055245 | 430 bp |
| lnc-SNRPN-8:117 | chr15:25056483-25062088 | 789 bp |
| lnc-SNRPN-8:118 | chr15:25059457-25122474 | 7846 bp |
| lnc-SNRPN-8:119 | chr15:25059457-25115656 | 4429 bp |
| lnc-SNRPN-8:120 | chr15:25064771-25074051 | 638 bp |
| lnc-SNRPN-8:121 | chr15:25076866-25085260 | 713 bp |
| lnc-SNRPN-8:122 | chr15:25076866-25083459 | 694 bp |
| lnc-SNRPN-8:123 | chr15:25081091-25113921 | 8993 bp |
| lnc-SNRPN-8:124 | chr15:25081154-25113927 | 8842 bp |
| lnc-SNRPN-8:125 | chr15:25083396-25122474 | 6671 bp |
| lnc-SNRPN-8:126 | chr15:25083458-25120353 | 4478 bp |
| lnc-SNRPN-8:127 | chr15:25085190-25110452 | 2286 bp |
| lnc-SNRPN-8:128 | chr15:25085271-25110455 | 2208 bp |
| lnc-SNRPN-8:129 | chr15:25087661-25088896 | 1236 bp |
| lnc-SNRPN-8:130 | chr15:25095461-25119354 | 2892 bp |
| lnc-SNRPN-8:131 | chr15:25098724-25099257 | 218 bp |
| lnc-SNRPN-8:132 | chr15:25108987-25109404 | 418 bp |
| lnc-SNRPN-8:133 | chr15:25108997-25119371 | 1490 bp |
| lnc-SNRPN-8:134 | chr15:25109003-25119428 | 1538 bp |
| lnc-SNRPN-8:135 | chr15:25109552-25119360 | 1166 bp |
| lnc-SNRPN-8:136 | chr15:25109552-25111929 | 329 bp |
| lnc-SNRPN-8:137 | chr15:25110437-25116439 | 690 bp |
| lnc-SNRPN-8:138 | chr15:25110483-25117482 | 615 bp |
| lnc-SNRPN-8:139 | chr15:25115015-25119428 | 1224 bp |
| lnc-SNRPN-8:140 | chr15:25115241-25119904 | 1477 bp |
| lnc-SNRPN-8:141 | chr15:25116545-25122474 | 4496 bp |
| lnc-SNRPN-8:142 | chr15:25116545-25122476 | 4498 bp |
| lnc-SNRPN-8:143 | chr15:25116545-25120051 | 2073 bp |
| lnc-SNRPN-8:144 | chr15:25117128-25120921 | 2357 bp |
| lnc-SNRPN-8:145 | chr15:25117410-25174870 | 631 bp |
| lnc-SNRPN-8:146 | chr15:25117472-25172996 | 513 bp |
| lnc-SNRPN-8:147 | chr15:25119065-25174870 | 752 bp |
| lnc-SNRPN-8:148 | chr15:25172979-25182051 | 621 bp |
| lnc-SNRPN-8:149 | chr15:25172979-25182105 | 662 bp |
| lnc-SNRPN-8:150 | chr15:25172979-25182051 | 608 bp |
| lnc-SNRPN-8:151 | chr15:25180314-25182708 | 779 bp |
| lnc-SNRPN-8:152 | chr15:25180314-25182708 | 812 bp |
| lnc-SNRPN-8:153 | chr15:25181810-25185574 | 615 bp |
| lnc-SNRPN-8:154 | chr15:25181843-25222285 | 3166 bp |
| lnc-SNRPN-8:155 | chr15:25182712-25186007 | 223 bp |
| lnc-SNRPN-8:156 | chr15:25182725-25186007 | 345 bp |
| lnc-SNRPN-8:157 | chr15:25185457-25189325 | 444 bp |
| lnc-SNRPN-8:158 | chr15:25189303-25193489 | 610 bp |
| lnc-SNRPN-8:159 | chr15:25191240-25197502 | 644 bp |
| lnc-SNRPN-8:160 | chr15:25193313-25197502 | 544 bp |
| lnc-SNRPN-8:161 | chr15:25197428-25214018 | 2097 bp |
| lnc-SNRPN-8:162 | chr15:25197428-25214018 | 1189 bp |
| lnc-SNRPN-8:163 | chr15:25206080-25213529 | 677 bp |
| lnc-SNRPN-8:164 | chr15:25211692-25212033 | 342 bp |
| lnc-SNRPN-8:165 | chr15:25213459-25222290 | 609 bp |
| lnc-SNRPN-8:166 | chr15:25218352-25247288 | 2896 bp |
| lnc-SNRPN-8:167 | chr15:25243936-25244387 | 302 bp |
| lnc-SNRPN-8:25 | chr15:25041689-25120432 | 13074 bp |
| lnc-SNRPN-8:87 | chr15:24978583-24983786 | 3210 bp |
| lnc-SNRPN-8:88 | chr15:24979557-25021354 | 2696 bp |
| lnc-SNRPN-8:89 | chr15:24979557-25021676 | 3018 bp |
| lnc-SNRPN-8:90 | chr15:24979557-25022666 | 4008 bp |
| lnc-SNRPN-8:91 | chr15:24981775-25021351 | 2469 bp |
| lnc-SNRPN-8:92 | chr15:24981994-25002830 | 550 bp |
| lnc-SNRPN-8:93 | chr15:24981994-24983790 | 1797 bp |
| lnc-SNRPN-8:94 | chr15:24996223-25119862 | 21686 bp |
| lnc-SNRPN-8:95 | chr15:24997954-25020810 | 1677 bp |
| lnc-SNRPN-8:96 | chr15:24997954-24999144 | 708 bp |
| lnc-SNRPN-8:97 | chr15:24998190-25026612 | 7203 bp |
| lnc-SNRPN-8:98 | chr15:24998424-25001731 | 676 bp |
| lnc-SNRPN-8:99 | chr15:25000242-25026632 | 6860 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| lnc-SNRPN-8 | no | no | no | no |
Available literature
- Qi (2017), Long non-coding RNA SNHG14 promotes microglia activation by regulating miR-145-5p/PLA2G4A in cerebral infarction., Neuroscience
- Kanduri (2016), Long noncoding RNAs: Lessons from genomic imprinting., Biochim. Biophys. Acta
- Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
- Zhao (2015), Identification of cancer-related lncRNAs through integrating genome, regulome and transcriptome features., Mol Biosyst
- Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
- Murrell (2014), Cross-talk between imprinted loci in Prader-Willi syndrome., Nat. Genet.
- Stelzer (2014), The noncoding RNA IPW regulates the imprinted DLK1-DIO3 locus in an induced pluripotent stem cell model of Prader-Willi syndrome., Nat. Genet.
- Powell (2013), A Prader-Willi locus lncRNA cloud modulates diurnal genes and energy expenditure., Hum. Mol. Genet.
- Clark (2012), Genome-wide analysis of long noncoding RNA stability., Genome Res.
- Vitali (2010), Long nuclear-retained non-coding RNAs and allele-specific higher-order chromatin organization at imprinted snoRNA gene arrays., J. Cell. Sci.
- Landers (2004), Regulation of the large (approximately 1000 kb) imprinted murine Ube3a antisense transcript by alternative exons upstream of Snurf/Snrpn., Nucleic Acids Res.
- Runte (2001), The IC-SNURF-SNRPN transcript serves as a host for multiple small nucleolar RNA species and as an antisense RNA for UBE3A., Hum. Mol. Genet.
- Wevrick (1997), An imprinted mouse transcript homologous to the human imprinted in Prader-Willi syndrome (IPW) gene., Hum. Mol. Genet.
- Rachmilewitz (1996), Characterization of the imprinted IPW gene: allelic expression in normal and tumorigenic human tissues., Oncogene
- Wevrick (1994), Identification of a novel paternally expressed gene in the Prader-Willi syndrome region., Hum. Mol. Genet.