Gene: lnc-TINCR-1
Basic information
LNCipedia gene ID: lnc-TINCR-1
Location (hg38): chr19:5558136-5568034
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA_gene
Transcripts: 11
Transcripts
| Transcript ID | Location (hg38) | Length |
|---|---|---|
| lnc-TINCR-1:1 | chr19:5558167-5568034 | 3733 bp |
| lnc-TINCR-1:10 | chr19:5561034-5562298 | 583 bp |
| lnc-TINCR-1:11 | chr19:5558165-5559279 | 1115 bp |
| lnc-TINCR-1:2 | chr19:5558169-5567994 | 3691 bp |
| lnc-TINCR-1:3 | chr19:5558167-5567994 | 3693 bp |
| lnc-TINCR-1:4 | chr19:5558136-5567953 | 4421 bp |
| lnc-TINCR-1:5 | chr19:5558167-5567953 | 3652 bp |
| lnc-TINCR-1:6 | chr19:5561632-5567953 | 524 bp |
| lnc-TINCR-1:7 | chr19:5562361-5567953 | 878 bp |
| lnc-TINCR-1:8 | chr19:5561632-5567831 | 402 bp |
| lnc-TINCR-1:9 | chr19:5559873-5562410 | 1856 bp |
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| lnc-TINCR-1 | no | no | no | no |
Available literature
- Jiang (2015), The lncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression., Cell Rep
- Konermann (2015), Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex., Nature
- Lopez-Pajares (2015), A LncRNA-MAF:MAFB transcription factor network regulates epidermal differentiation., Dev. Cell
- Sun (2015), CALML5 is a ZNF750- and TINCR-induced protein that binds stratifin to regulate epidermal differentiation., Genes Dev.
- Xiao (2015), Predicting the functions of long noncoding RNAs using RNA-seq based on Bayesian network., Biomed Res Int
- Xu (2015), SP1-induced upregulation of the long noncoding RNA TINCR regulates cell proliferation and apoptosis by affecting KLF2 mRNA stability in gastric cancer., Oncogene
- Li (2014), Transcriptome analysis of psoriasis in a large case-control sample: RNA-seq provides insights into disease mechanisms., J. Invest. Dermatol.
- Li (2014), [Long noncoding RNAs in gene expression control]., Zhong Nan Da Xue Xue Bao Yi Xue Ban
- Kretz (2013), Control of somatic tissue differentiation by the long non-coding RNA TINCR., Nature
- Kretz (2013), TINCR, staufen1, and cellular differentiation., RNA Biol