Transcript: DLEU2:12

Basic information

LNCipedia transcript ID: DLEU2:12 
LNCipedia gene ID: DLEU2
Location (hg38): chr13:50043436-50081978
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2090 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000438752; ENST00000438752.1; DLEU2-006; OTTHUMT00000044959.1; NONHSAT033791
Alternative gene names: ENSG00000231607; DLEU2; ENSG00000231607.2; OTTHUMG00000016927.1; LEU2; TRIM13OS; NCRNA00022; LINC00022; MIR15AHG

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.9372 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLEU2:12 no no no no

Available literature

  1. Li (2014), Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets., Front Bioeng Biotechnol
  2. Niazi (2012), Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs., RNA
  3. Mertens (2000), BCMSUN, a candidate gene for B-cell chronic lymphocytic leukemia and mantle-cell lymphoma, has an independently expressed homolog on 1p22-p31, BCMSUN-like., Int. J. Cancer
  4. Liu (1997), Cloning of two candidate tumor suppressor genes within a 10 kb region on chromosome 13q14, frequently deleted in chronic lymphocytic leukemia., Oncogene

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SPRYD7-1:4
3.1 lnc-SPRYD7-1:5
4.0 DLEU2:12
4.1 DLEU2:12
5.0 DLEU2:12
5.1 DLEU2:12
5.2 DLEU2:12