Transcript: DLEU2:48

Basic information

LNCipedia transcript ID: DLEU2:48 
LNCipedia gene ID: DLEU2
Location (hg38): chr13:49931018-49935753
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 254 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT033767
Alternative gene names: LEU2; TRIM13OS; NCRNA00022; LINC00022; MIR15AHG


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.5512 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DLEU2:48 yes no no no

Available literature

  1. Li (2014), Discovery of Protein-lncRNA Interactions by Integrating Large-Scale CLIP-Seq and RNA-Seq Datasets., Front Bioeng Biotechnol
  2. Niazi (2012), Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs., RNA
  3. Mertens (2000), BCMSUN, a candidate gene for B-cell chronic lymphocytic leukemia and mantle-cell lymphoma, has an independently expressed homolog on 1p22-p31, BCMSUN-like., Int. J. Cancer
  4. Liu (1997), Cloning of two candidate tumor suppressor genes within a 10 kb region on chromosome 13q14, frequently deleted in chronic lymphocytic leukemia., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KPNA3-1:1
4.0 lnc-KPNA3-1:1
4.1 DLEU2:48
5.0 DLEU2:48
5.1 DLEU2:48
5.2 DLEU2:48