Transcript: FIRRE:6

Basic information

LNCipedia transcript ID: FIRRE:6 
LNCipedia gene ID: FIRRE
Location (hg38): chrX:131768567-131784015
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 259 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1888:1
Alternative gene names: LINC01200


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -88.3516 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FIRRE:6 no no no no

Available literature

  1. Hacisuleyman (2016), Function and evolution of local repeats in the Firre locus., Nat Commun
  2. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
  3. Yang (2015), The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation., Genome Biol.
  4. Chapman (2014), Differentially methylated CpG island within human XIST mediates alternative P2 transcription and YY1 binding., BMC Genet.
  5. Hacisuleyman (2014), Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre., Nat. Struct. Mol. Biol.
  6. Luco (2013), The non-coding genome: a universe in expansion for fine-tuning the coding world., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 FIRRE:6
4.1 FIRRE:6
5.0 FIRRE:6
5.1 FIRRE:6
5.2 FIRRE:6