Basic information

LNCipedia gene ID: FIRRE 
Location (hg38): chrX:131689737-131830643
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 22


Transcript IDLocation (hg38)Length
FIRRE:1 chrX:131702650-131830643 2928 bp
FIRRE:10 chrX:131755611-131830604 1398 bp
FIRRE:11 chrX:131701389-131830604 3948 bp
FIRRE:12 chrX:131701389-131830604 8415 bp
FIRRE:13 chrX:131711730-131830604 1568 bp
FIRRE:14 chrX:131784502-131830604 3185 bp
FIRRE:15 chrX:131702650-131830604 2889 bp
FIRRE:16 chrX:131749402-131794467 381 bp
FIRRE:17 chrX:131749304-131794467 628 bp
FIRRE:18 chrX:131755571-131794467 853 bp
FIRRE:19 chrX:131761935-131794467 515 bp
FIRRE:2 chrX:131711651-131830643 1662 bp
FIRRE:20 chrX:131749350-131794467 429 bp
FIRRE:21 chrX:131691530-131755666 1635 bp
FIRRE:22 chrX:131702652-131830643 2926 bp
FIRRE:3 chrX:131794271-131830643 2625 bp
FIRRE:4 chrX:131795657-131796167 511 bp
FIRRE:5 chrX:131756611-131785266 510 bp
FIRRE:6 chrX:131768567-131784015 259 bp
FIRRE:7 chrX:131689737-131755745 3137 bp
FIRRE:8 chrX:131743109-131755743 439 bp
FIRRE:9 chrX:131689902-131692853 524 bp

Locus conservation

Locus conservation?
FIRRE no no no no

Available literature

  1. Hacisuleyman (2016), Function and evolution of local repeats in the Firre locus., Nat Commun
  2. Qiu (2015), Long non-coding RNA LINC01296 is a potential prognostic biomarker in patients with colorectal cancer., Tumour Biol.
  3. Yang (2015), The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation., Genome Biol.
  4. Chapman (2014), Differentially methylated CpG island within human XIST mediates alternative P2 transcription and YY1 binding., BMC Genet.
  5. Hacisuleyman (2014), Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre., Nat. Struct. Mol. Biol.
  6. Luco (2013), The non-coding genome: a universe in expansion for fine-tuning the coding world., Genome Biol.