Transcript: HCG15:9

Basic information

LNCipedia transcript ID: HCG15:9 
LNCipedia gene ID: HCG15
Location (hg38): chr6:28985694-28987484
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1541 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227214.2|ENST00000438190.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 47.4718 non-coding 
CPAT coding probability 0.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
HCG15:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-C6orf100-3:5
5.0 lnc-C6orf100-3:5
5.1 HCG15:4
5.2 HCG15:9