Transcript: HCG23:2

Basic information

LNCipedia transcript ID: HCG23:2 
LNCipedia gene ID: HCG23
RefSeq ID: NR_044996
Location (hg38): chr6:32390510-32393691
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 615 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108902; NR_044996; NR_044996.1
Alternative gene names: dJ1077I5.3; HCG23


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -624.7748 non-coding 
CPAT coding probability 35.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG23:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HLA-DRA-1:3
4.0 HCG23:2
4.1 HCG23:2
5.0 HCG23:2
5.1 HCG23:2
5.2 HCG23:2