Transcript: HCG23:3

Basic information

LNCipedia transcript ID: HCG23:3 
LNCipedia gene ID: HCG23
Location (hg38): chr6:32392543-32393470
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 837 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012469; NONHSAT108903
Alternative gene names: XLOC_005254; linc-C6orf10-AS; dJ1077I5.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.1377 non-coding 
CPAT coding probability 5.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HCG23:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HLA-DRA-1:1
3.1 lnc-HLA-DRA-1:2
4.0 HCG23:3
4.1 HCG23:3
5.0 HCG23:3
5.1 HCG23:3
5.2 HCG23:3