Transcript: HOTAIRM1:15
Basic information
LNCipedia transcript ID: HOTAIRM1:15
LNCipedia gene ID: HOTAIRM1
Location (hg38): chr7:27096170-27099966
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 700 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233429.5|ENST00000425358.2
Alternative gene names: HOXA-AS1; NCRNA00179; HOXA1-AS1
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| HOTAIRM1:15 | no | no | no | no |
Available literature
- Zhou (2016), Microarray expression profile analysis of long non-coding RNAs in pancreatic ductal adenocarcinoma., Int. J. Oncol.
- Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.
- Carpenter (2015), Editorial: Functions of Non-Coding RNA in Innate Immunity., Front Immunol
- Chen (2015), Differential lncRNA expression profiles in recurrent gliomas compared with primary gliomas identified by microarray analysis., Int J Clin Exp Med
- Díaz-Beyá (2015), The lincRNA HOTAIRM1, located in the HOXA genomic region, is expressed in acute myeloid leukemia, impacts prognosis in patients in the intermediate-risk cytogenetic category, and is associated with a distinctive microRNA signature., Oncotarget
- Hao (2015), HOTAIR is upregulated in acute myeloid leukemia and that indicates a poor prognosis., Int J Clin Exp Pathol
- Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
- Jiang (2015), Long non-coding RNA profiling links subgroup classification of endometrioid endometrial carcinomas with trithorax and polycomb complex aberrations., Oncotarget
- Pastori (2015), The Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation., Proc. Natl. Acad. Sci. U.S.A.
- Zhu (2015), Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection., BMC Med Genomics
- Atianand (2014), Long non-coding RNAs and control of gene expression in the immune system., Trends Mol Med
- Lertampaiporn (2014), Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm., Nucleic Acids Res.
- Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget
- Zhang (2014), Long intergenic non-coding RNA HOTAIRM1 regulates cell cycle progression during myeloid maturation in NB4 human promyelocytic leukemia cells., RNA Biol
- Garding (2013), Epigenetic upregulation of lncRNAs at 13q14.3 in leukemia is linked to the In Cis downregulation of a gene cluster that targets NF-kB., PLoS Genet.
- Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.
- Kim (2013), HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer., Oncogene
- Wan (2013), Long non-coding RNA ANRIL (CDKN2B-AS) is induced by the ATM-E2F1 signaling pathway., Cell. Signal.
- Zhao (2013), HOX antisense lincRNA HOXA-AS2 is an apoptosis repressor in all trans retinoic acid treated NB4 promyelocytic leukemia cells., J. Cell. Biochem.
- Nam (2012), Long noncoding RNAs in C. elegans., Genome Res.
- Lin (2011), RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders., PLoS ONE
- Zhang (2009), A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster., Blood
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 4.1 | HOTAIRM1:15 |
| 5.0 | HOTAIRM1:15 |
| 5.1 | HOTAIRM1:15 |
| 5.2 | HOTAIRM1:15 |