Transcript: LINC00466:13

Basic information

LNCipedia transcript ID: LINC00466:13 
HGNC Gene Symbol: LINC00466    
HGNC Full Gene Name: long intergenic non-protein coding RNA 466
Ensembl Gene ID: ENSG00000224209
Ensembl Transcript ID: ENST00000418086
Location (hg38): chr1:63222885-63261804
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 403 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418086; ENST00000418086.1; LINC00466-003; OTTHUMT00000025339.1; NONHSAT003660
Alternative gene names: ENSG00000224209; RP11-335E6.1; ENSG00000224209.1; LINC00466; OTTHUMG00000009143.1; ENSG00000224209.2; ENSG00000224209.7;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.2362 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00466:13 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITGB3BP-1:3
3.1 lnc-ITGB3BP-2:3
4.0 LINC00466:13
4.1 LINC00466:13
5.0 LINC00466:13
5.1 LINC00466:13
5.2 LINC00466:13