Transcript: LINC00466:6

Basic information

LNCipedia transcript ID: LINC00466:6 
LNCipedia gene ID: LINC00466
Location (hg38): chr1:63159083-63317230
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1793 bp
Exons: 12
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - Dec 2014
Alternative transcript names: ENST00000447183; ENST00000447183.1; LINC00466-001; OTTHUMT00000025337.1; NONHSAT003655; NR_038252
Alternative gene names: ENSG00000224209; RP11-335E6.1; ENSG00000224209.1; LINC00466; OTTHUMG00000009143.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -37.0473 non-coding 
CPAT coding probability 4.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00466:6 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITGB3BP-1:2
3.1 lnc-ITGB3BP-2:2
4.0 LINC00466:6
4.1 LINC00466:6
5.0 LINC00466:6
5.1 LINC00466:6
5.2 LINC00466:6