Transcript: LINC00467:9

Basic information

LNCipedia transcript ID: LINC00467:9 
HGNC Gene Symbol: LINC00467    
HGNC Full Gene Name: long intergenic non-protein coding RNA 467
Ensembl Gene ID: ENSG00000153363
Ensembl Transcript ID: ENST00000448567
Location (hg38): chr1:211382837-211391976
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 478 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000448567; ENST00000448567.1; LINC00467-002; OTTHUMT00000089832.2; NONHSAT009293; ENST00000448567.2
Alternative gene names: ENSG00000153363; C1orf97; ENSG00000153363.8; LINC00467; OTTHUMG00000036998.3; ENSG00000153363.12; MGC14801


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.1714 non-coding 
CPAT coding probability 9.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00467:9 no no no no

Available literature

  1. Atmadibrata (2014), The novel long noncoding RNA linc00467 promotes cell survival but is down-regulated by N-Myc., PLoS ONE
  2. Pichler (2014), Long noncoding RNA in neuroblastoma: new light on the (old) N-Myc story., J. Natl. Cancer Inst.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRAF5-1:3
3.1 lnc-TRAF5-1:3
4.0 LINC00467:9
4.1 LINC00467:9
5.0 LINC00467:9
5.1 LINC00467:9
5.2 LINC00467:9