Transcript: LINC00472:9

Basic information

LNCipedia transcript ID: LINC00472:9 
LNCipedia gene ID: LINC00472
RefSeq ID: NR_121614
Location (hg38): chr6:71407864-71420745
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 9449 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121614; NR_121614.1
Alternative gene names: dJ288M22.3; FLJ13189; LINC00472


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 5.5674 non-coding 
CPAT coding probability 47.70% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00472:9 no no no no

Available literature

  1. Permuth (2017), Linc-ing Circulating Long Non-coding RNAs to the Diagnosis and Malignant Prediction of Intraductal Papillary Mucinous Neoplasms of the Pancreas., Sci Rep
  2. Fu (2016), Long non-coding RNAs, ASAP1-IT1, FAM215A, and LINC00472, in epithelial ovarian cancer., Gynecol. Oncol.
  3. Dhir (2015), Microprocessor mediates transcriptional termination of long noncoding RNA transcripts hosting microRNAs., Nat. Struct. Mol. Biol.
  4. Shen (2015), Prognostic and predictive values of long non-coding RNA LINC00472 in breast cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-B3GAT2-3:38
4.0 LINC00472:9
4.1 LINC00472:9
5.0 LINC00472:9
5.1 LINC00472:9
5.2 LINC00472:9