Transcript: MMP2-AS1:11

Basic information

LNCipedia transcript ID: MMP2-AS1:11 
HGNC Gene Symbol: MMP2-AS1    
HGNC Full Gene Name: MMP2 antisense RNA 1
Ensembl Gene ID: ENSG00000260135
Ensembl Transcript ID: ENST00000620495
Location (hg38): chr16:55426797-55427951
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 625 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000620495.1
Alternative gene names: ENSG00000260135.6; RP11-212I21.2; MMP2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -87.4693 non-coding 
CPAT coding probability 76.41% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
MMP2-AS1:11 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CES1-1:5
4.1 lnc-CES1-1:5
5.0 lnc-CES1-1:5
5.1 MMP2-AS1:6
5.2 MMP2-AS1:11