Transcript: MMP2-AS1:7

Basic information

LNCipedia transcript ID: MMP2-AS1:7 
HGNC Gene Symbol: MMP2-AS1    
HGNC Full Gene Name: MMP2 antisense RNA 1
Ensembl Gene ID: ENSG00000260135
Ensembl Transcript ID: ENST00000569037
Location (hg38): chr16:55427558-55462297
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 553 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569037.1; RP11-212I21.2-001; OTTHUMT00000433256.1; NONHSAT142632; ENST00000569037.5
Alternative gene names: ENSG00000260135.2; RP11-212I21.2; OTTHUMG00000176716.1; ENSG00000260135.6; MMP2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.5667 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MMP2-AS1:7 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CES1-1:1
4.0 lnc-CES1-1:1
4.1 lnc-CES1-1:1
5.0 lnc-CES1-1:1
5.1 MMP2-AS1:2
5.2 MMP2-AS1:7