Transcript: MMP2-AS1:9

Basic information

LNCipedia transcript ID: MMP2-AS1:9 
LNCipedia gene ID: MMP2-AS1
Location (hg38): chr16:55429440-55444183
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 308 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024668; NONHSAT142634
Alternative gene names: XLOC_011952; linc-IRX3-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.5667 non-coding 
CPAT coding probability 5.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MMP2-AS1:9 no no no no

Available literature

  1. Long (2016), Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls., Clin. Chim. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CES1-1:1
3.1 lnc-CES1-1:3
4.0 lnc-CES1-1:3
4.1 lnc-CES1-1:3
5.0 lnc-CES1-1:3
5.1 MMP2-AS1:4
5.2 MMP2-AS1:9