Transcript: NR2F1-AS1:13

Basic information

LNCipedia transcript ID: NR2F1-AS1:13 
HGNC Gene Symbol: NR2F1-AS1    
HGNC Full Gene Name: NR2F1 antisense RNA 1
Ensembl Gene ID: ENSG00000237187
Ensembl Transcript ID: ENST00000504474
Location (hg38): chr5:93541872-93581297
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2868 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000504474; ENST00000504474.1; RP11-65F13.2-004; OTTHUMT00000369866.1; NONHSAT102802; ENST00000504474.5
Alternative gene names: ENSG00000237187; RP11-65F13.2; ENSG00000237187.3; OTTHUMG00000162643.1; ENSG00000237187.4; NR2F1-AS1; ENSG00000237187.8; FLJ42709


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.5589 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
NR2F1-AS1:13 no no no no

Available literature

  1. Huang (2018), LncRNA NR2F1-AS1 regulates hepatocellular carcinoma oxaliplatin resistance by targeting ABCC1 via miR-363., J. Cell. Mol. Med.
  2. Li (2015), Comparative transcriptomic analysis of multiple cardiovascular fates from embryonic stem cells predicts novel regulators in human cardiogenesis., Sci Rep
  3. Ramos (2013), Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo., Cell Stem Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM172A-2:2
3.1 lnc-FAM172A-2:2
4.0 NR2F1-AS1:13
4.1 NR2F1-AS1:13
5.0 NR2F1-AS1:13
5.1 NR2F1-AS1:13
5.2 NR2F1-AS1:13