Transcript: NR2F1-AS1:31

Basic information

LNCipedia transcript ID: NR2F1-AS1:31 
LNCipedia gene ID: NR2F1-AS1
RefSeq ID: NR_109825
Location (hg38): chr5:93409356-93571343
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3620 bp
Exons: 9
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109825; NR_109825.1
Alternative gene names: FLJ42709; NR2F1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.9334 non-coding 
CPAT coding probability 60.95% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
NR2F1-AS1:31 no no no no

Available literature

  1. Huang (2018), LncRNA NR2F1-AS1 regulates hepatocellular carcinoma oxaliplatin resistance by targeting ABCC1 via miR-363., J. Cell. Mol. Med.
  2. Li (2015), Comparative transcriptomic analysis of multiple cardiovascular fates from embryonic stem cells predicts novel regulators in human cardiogenesis., Sci Rep
  3. Ramos (2013), Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo., Cell Stem Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM172A-2:31
4.0 NR2F1-AS1:31
4.1 NR2F1-AS1:31
5.0 NR2F1-AS1:31
5.1 NR2F1-AS1:31
5.2 NR2F1-AS1:31