Transcript: NUTM2A-AS1:15

Basic information

LNCipedia transcript ID: NUTM2A-AS1:15 
HGNC Gene Symbol: NUTM2A-AS1    
HGNC Full Gene Name: NUTM2A antisense RNA 1
Ensembl Gene ID: ENSG00000223482
Ensembl Transcript ID: ENST00000447424
Location (hg38): chr10:87238667-87336874
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447424.1; RP11-322M19.1-011; OTTHUMT00000049209.1; NONHSAT015410; ENST00000447424.5
Alternative gene names: ENSG00000223482.1; RP11-322M19.1; OTTHUMG00000018671.1; ENSG00000223482.3; NUTM2A-AS1; ENSG00000223482.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.0326 non-coding 
CPAT coding probability 6.44% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.14202642
covF1Prop0.142857143
seqAAMTLTDKTLFRKTDGVSLSPRLECSGMILVH

In stringent set: no

Locus conservation

Locus conservation?
NUTM2A-AS1:15 no no no no

Available literature

  1. Joo (2014), Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epithelium., Mol. Vis.
  2. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GLUD1-4:7
4.0 NUTM2A-AS1:15
4.1 NUTM2A-AS1:15
5.0 NUTM2A-AS1:15
5.1 NUTM2A-AS1:15
5.2 NUTM2A-AS1:15