Transcript: PANTR1:43

Basic information

LNCipedia transcript ID: PANTR1:43 
HGNC Gene Symbol: PANTR1    
HGNC Full Gene Name: POU3F3 adjacent non-coding transcript 1
Ensembl Gene ID: ENSG00000233639
Ensembl Transcript ID: ENST00000454729
Location (hg38): chr2:104807577-104851476
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 722 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454729.1; AC018730.1-005; OTTHUMT00000329331.1
Alternative gene names: ENSG00000233639.1; AC018730.1; OTTHUMG00000153065.1; LINC01158; ENSG00000233639.5; linc-Brn1a


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -213.5178 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PANTR1:43 no no no no

Available literature

  1. Li (2014), Increased levels of the long intergenic non-protein coding RNA POU3F3 promote DNA methylation in esophageal squamous cell carcinoma cells., Gastroenterology
  2. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
  3. Lin (2011), RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TGFBRAP1-6:4
4.0 LINC01158:8
4.1 LINC01158:8
5.0 LINC01158:8
5.1 PANTR1:15
5.2 PANTR1:43