Gene: PANTR1

Basic information

LNCipedia gene ID: PANTR1 
Location (hg38): chr2:104797120-104853815
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA_gene
Transcripts: 29

Transcripts

Transcript IDLocation (hg38)Length
PANTR1:12 chr2:104807572-104853183 608 bp
PANTR1:17 chr2:104807572-104851476 699 bp
PANTR1:18 chr2:104807572-104851476 652 bp
PANTR1:31 chr2:104807580-104853815 1260 bp
PANTR1:32 chr2:104807580-104853785 1202 bp
PANTR1:33 chr2:104807580-104853785 1273 bp
PANTR1:34 chr2:104797120-104853569 509 bp
PANTR1:35 chr2:104807568-104853189 571 bp
PANTR1:36 chr2:104807568-104853189 817 bp
PANTR1:37 chr2:104807568-104853189 789 bp
PANTR1:38 chr2:104807573-104853189 613 bp
PANTR1:39 chr2:104807582-104853189 678 bp
PANTR1:40 chr2:104807573-104853183 607 bp
PANTR1:41 chr2:104807585-104853136 501 bp
PANTR1:42 chr2:104807580-104851570 785 bp
PANTR1:43 chr2:104807577-104851476 722 bp
PANTR1:44 chr2:104805425-104851476 2874 bp
PANTR1:45 chr2:104807572-104851461 637 bp
PANTR1:46 chr2:104807577-104851458 747 bp
PANTR1:47 chr2:104805519-104851458 2762 bp
PANTR1:48 chr2:104807573-104851453 675 bp
PANTR1:49 chr2:104807572-104851453 629 bp
PANTR1:50 chr2:104807573-104851453 675 bp
PANTR1:51 chr2:104807577-104851453 699 bp
PANTR1:52 chr2:104807577-104851453 742 bp
PANTR1:53 chr2:104807575-104845175 646 bp
PANTR1:54 chr2:104807568-104845134 612 bp
PANTR1:55 chr2:104807580-104830051 637 bp
PANTR1:56 chr2:104807575-104812856 603 bp


Locus conservation

Locus conservation?
PANTR1 no no no no

Available literature

  1. Li (2014), Increased levels of the long intergenic non-protein coding RNA POU3F3 promote DNA methylation in esophageal squamous cell carcinoma cells., Gastroenterology
  2. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
  3. Lin (2011), RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders., PLoS ONE