Transcript: PANTR1:47

Basic information

LNCipedia transcript ID: PANTR1:47 
LNCipedia gene ID: PANTR1
Location (hg38): chr2:104805519-104851458
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2762 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00002761
Alternative gene names: XLOC_002241; linc-MFSD9-15; linc-Brn1a


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.8575 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PANTR1:47 no no no no

Available literature

  1. Li (2014), Increased levels of the long intergenic non-protein coding RNA POU3F3 promote DNA methylation in esophageal squamous cell carcinoma cells., Gastroenterology
  2. Sauvageau (2013), Multiple knockout mouse models reveal lincRNAs are required for life and brain development., Elife
  3. Lin (2011), RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TGFBRAP1-5:6
3.1 lnc-TGFBRAP1-6:7
4.0 LINC01158:12
4.1 LINC01158:12
5.0 LINC01158:12
5.1 PANTR1:21
5.2 PANTR1:47