Transcript: PHACTR2-AS1:5

Basic information

LNCipedia transcript ID: PHACTR2-AS1:5 
LNCipedia gene ID: PHACTR2-AS1
RefSeq ID: NR_110148
Location (hg38): chr6:143554115-143562051
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1929 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110148; NR_110148.1
Alternative gene names: ; PHACTR2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.4834 non-coding 
CPAT coding probability 22.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PHACTR2-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FUCA2-1:6
4.0 PHACTR2-AS1:5
4.1 PHACTR2-AS1:5
5.0 PHACTR2-AS1:5
5.1 PHACTR2-AS1:5
5.2 PHACTR2-AS1:5