Transcript: PHACTR2-AS1:8

Basic information

LNCipedia transcript ID: PHACTR2-AS1:8 
HGNC Gene Symbol: PHACTR2-AS1    
HGNC Full Gene Name: PHACTR2 antisense RNA 1
Ensembl Gene ID: ENSG00000235740
Ensembl Transcript ID: ENST00000450575
Location (hg38): chr6:143554325-143562031
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1699 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450575.1; RP11-436I24.1-001; OTTHUMT00000042527.1; NONHSAT115360
Alternative gene names: ENSG00000235740.1; RP11-436I24.1; OTTHUMG00000015731.1; PHACTR2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.4834 non-coding 
CPAT coding probability 22.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PHACTR2-AS1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FUCA2-1:1
4.0 PHACTR2-AS1:8
4.1 PHACTR2-AS1:8
5.0 PHACTR2-AS1:8
5.1 PHACTR2-AS1:8
5.2 PHACTR2-AS1:8