Transcript: SAMMSON:1

Basic information

LNCipedia transcript ID: SAMMSON:1 ?
LNCipedia gene ID: SAMMSON
Location (hg38): chr3:69999577-70013867
Strand: +
Class: intergenic
Transcript size: 513 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000488861; TCONS_00005539; ENST00000488861.1; RP11-460N16.1-002; OTTHUMT00000352920.1; NONHSAT090372; ENST00000488861.5
Alternative gene names: ENSG00000240405; XLOC_002696; linc-GPR27-4; RP11-460N16.1; ENSG00000240405.1; OTTHUMG00000159017.1; ENSG00000240405.5; LINC01212; ; SAMMSON


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -111.805 non-coding ?
CPAT coding probability 2.71% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:1 no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


Other resources

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-MITF-1:1
4.1 SAMMSON:1
4.0 SAMMSON:1
1.3 lnc-MITF-1:1