Transcript: SAMMSON:12

Basic information

LNCipedia transcript ID: SAMMSON:12 
LNCipedia gene ID: SAMMSON
Location (hg38): chr3:70065114-70070449
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2457 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT090375; FPKM1_group_21403_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.796 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:12 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MITF-5:1
4.0 lnc-MITF-5:1
4.1 SAMMSON:12
5.0 SAMMSON:12
5.1 SAMMSON:12
5.2 SAMMSON:12