Transcript: SAMMSON:13

Basic information

LNCipedia transcript ID: SAMMSON:13 
LNCipedia gene ID: SAMMSON
Location (hg38): chr3:70082434-70097988
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2024 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc003dog_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.3052 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:13 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MITF-6:1
4.0 lnc-MITF-6:1
4.1 SAMMSON:13
5.0 SAMMSON:13
5.1 SAMMSON:13
5.2 SAMMSON:13