Transcript: SAMMSON:3

Basic information

LNCipedia transcript ID: SAMMSON:3 ?
HGNC Gene Symbol: SAMMSON    ?
HGNC Full Gene Name: survival associated mitochondrial melanoma specific oncogenic non-coding RNA
Location (hg19): chr3:70048895-70064449
Strand: +
Class: intergenic
Transcript size: 2024 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00005416
Alternative gene names: XLOC_002696; linc-GPR27-4;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score 15.2547 non-coding ?
CPAT coding probability 20.89% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:3 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy: -655.11
Randfold P-value: 0.001

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-MITF-1:2
1.3 lnc-MITF-1:3