Transcript: SAMMSON:32

Basic information

LNCipedia transcript ID: SAMMSON:32 
HGNC Gene Symbol: SAMMSON    
HGNC Full Gene Name: survival associated mitochondrial melanoma specific oncogenic non-coding RNA
Ensembl Gene ID: ENSG00000240405
Ensembl Transcript ID: ENST00000641286
Location (hg38): chr3:69999733-70014787
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1645 bp
Exons: 3
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641286.1
Alternative gene names: ENSG00000240405.6; SAMMSON


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -95.9994 non-coding 
CPAT coding probability 14.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:32 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 SAMMSON:32
5.1 SAMMSON:32
5.2 SAMMSON:32