Transcript: SAMMSON:34

Basic information

LNCipedia transcript ID: SAMMSON:34 
LNCipedia gene ID: SAMMSON
RefSeq ID: NR_110000
Location (hg38): chr3:69999744-70015301
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2027 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110000.1
Alternative gene names: SAMMSON


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 15.2547 non-coding 
CPAT coding probability 14.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SAMMSON:34 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 SAMMSON:34
5.1 SAMMSON:34
5.2 SAMMSON:34