Transcript: SAMMSON:38

Basic information

LNCipedia transcript ID: SAMMSON:38 
HGNC Gene Symbol: SAMMSON    
HGNC Full Gene Name: survival associated mitochondrial melanoma specific oncogenic non-coding RNA
Ensembl Gene ID: ENSG00000240405
Ensembl Transcript ID: ENST00000641005
Location (hg38): chr3:69999788-70205924
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2168 bp
Exons: 6
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000641005.1
Alternative gene names: ENSG00000240405.6; SAMMSON


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 42.2424 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SAMMSON:38 no no no no

Available literature

  1. Leucci (2016), Melanoma addiction to the long non-coding RNA SAMMSON., Nature


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 SAMMSON:38
5.1 SAMMSON:38
5.2 SAMMSON:38